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How to Fix Invalid VMs in vCenter: Step-by-Step Guide

Complete guide to troubleshoot and fix invalid virtual machines in vCenter. Learn re-registration, datastore fixes, and permanent solutions to resolve VM errors.

How to Fix Invalid VMs in vCenter: Step-by-Step Guide

This comprehensive guide walks through step-by-step troubleshooting techniques to diagnose and resolve invalid VM states, including checking logs, reloading VMs, fixing storage issues, and preventing future occurrences.

Understanding Invalid VM Status

When a virtual machine is marked as “Invalid” in vCenter, it indicates that vCenter is unable to retrieve the VM’s configuration or metadata, making it unmanageable from the vSphere interface.

Common Causes

  • vCenter and ESXi Host Communication Issues: Network disruptions, host failures, or vCenter service issues
  • Corrupt or Missing VM Configuration Files: .vmx and .vmdk files may become corrupted or deleted
  • Datastore Inaccessibility: Storage failures, disconnected datastores, or insufficient space
  • Permissions Issues: vCenter or ESXi lacking sufficient permissions to access VM files
  • Host Disconnections: ESXi host goes offline, crashes, or enters maintenance mode

Step-by-Step Troubleshooting

Option 1: Reload the VM

If the VM appears in the ESXi inventory but is invalid, try reloading it:

ssh root@<ESXi_host_IP>
vim-cmd vmsvc/getallvms
vim-cmd vmsvc/reload <VM_ID>

Option 2: Remove and Re-Register VM

  • In vSphere Web Client, right-click the invalid VM and select “Remove from Inventory”
  • Browse to the datastore and locate the VM folder
  • Find the .vmx file and right-click to select “Register VM”
  • Once registered, try powering on the VM

Important: When removing from inventory, do NOT delete the files. Only remove the registration.

Fixing Storage and Datastore Issues

If the VM’s storage is inaccessible, vCenter cannot read the VMX file. Here’s how to resolve storage-related issues:

Check Datastore Availability

esxcli storage filesystem list
esxcli storage filesystem mount -u <UUID>

Restart Storage Services

/etc/init.d/lwiod restart
/etc/init.d/nfs restart

Prevention Best Practices

  • Monitor logs regularly: Use vRealize Log Insight or Splunk for log aggregation and early warning alerts
  • Ensure datastore redundancy: Use multipath storage configurations and implement storage redundancy
  • Automate VM backups: Regular backups of VM metadata using Veeam, VDP, or enterprise backup solutions
  • Keep systems updated: Regular updates for vCenter and ESXi with proper testing environments
  • Implement proper VM management: Avoid force power-offs and use Storage vMotion for migrations

Pro Tip: If issues persist, contact VMware Support with log files for deeper analysis. Always test solutions in non-production environments first.

Frequently Asked Questions

Find answers to common questions

Five main causes: VM files deleted/moved on datastore (70% of cases), host disconnect/failure, storage path broken, VM removed from inventory then re-added incorrectly, corrupted .vmx file. Most common scenario: someone deleted VM folder via datastore browser without removing from inventory—vCenter can't find files, marks invalid. ESXi host failure: VMs on crashed host show invalid until host reconnects (usually temporary). Storage issues: NFS mount fails, iSCSI path down, datastore unmounted—all VMs on that storage go invalid. Corrupted .vmx: power outage during VM config change corrupts descriptor file. Human error: accidentally removing VM from inventory then browsing datastore and re-adding wrong .vmx file. Check vCenter Tasks for recent activity before VM went invalid—often shows storage disconnect or datastore operation. Quick diagnosis: browse datastore, verify VM folder exists with all files (.vmx, .vmdk, .nvram).

Step 1: Right-click VM, select "Remove from Inventory" (doesn't delete files). Step 2: Browse datastore, locate VM folder, verify .vmx file exists. Step 3: Right-click .vmx, select "Register VM", choose datacenter/cluster/resource pool, click OK. VM should now show valid. If still invalid: Step 4: Check .vmx file for corruption—download, open in text editor, look for incomplete lines or binary garbage. Step 5: Restore .vmx from backup or recreate from .vmx~ (automatic backup file in same folder). If .vmx missing: Step 6: Create new .vmx using VM files present—vmkfstools or New-VM PowerShell with existing .vmdk. Timeframe: simple re-register = 2-5 minutes, .vmx corruption fix = 15-30 minutes, recreate from scratch = 1-2 hours. Prevention: enable vCenter VM snapshots, backup .vmx files regularly, don't manipulate datastore directly (use vCenter).

No—"Remove from Inventory" only deletes vCenter database entry, VM files stay on datastore untouched. This is safe operation for fixing invalid VMs. Confusion: "Remove from Inventory" vs "Delete from Disk"—first keeps files, second deletes everything. When you remove invalid VM: .vmx, .vmdk, .nvram, snapshots all remain on datastore (zero data loss). Re-registering VM: browse datastore, find .vmx, right-click Register VM—restores full VM with all data intact. Caveat: if VM went invalid because files were already deleted, removing from inventory doesn't cause deletion (files already gone). Verify before removing: browse datastore in vCenter, confirm VM folder and files exist. If files present: safe to remove from inventory and re-register. If files missing: removing from inventory just cleans up vCenter (VM already lost). Best practice: always browse datastore first to understand why VM is invalid.

Five preventive measures: 1) Never manipulate datastore directly—always use vCenter/PowerCLI for VM operations (90% of invalid VM issues from direct datastore changes). 2) Monitor storage health—configure vCenter alarms for datastore disconnects, check iSCSI/NFS paths weekly, test storage failover quarterly. 3) Enable HA/DRS—automatic VM recovery if host fails, prevents invalid state from host crashes. 4) Backup .vmx files—script to copy .vmx files weekly to backup location (easy restore if corruption). 5) Avoid manual inventory changes—train team to use vCenter properly, restrict datastore browser permissions. PowerCLI prevention script: Get-VM | Export-VmxConfig -Destination \backup\vmx. Storage monitoring: vCenter Alarms → Datastore → Connection/Latency alerts. Access control: vSphere roles—don't give Datastore.FileManagement permission to non-admins. Recovery testing: quarterly DR drill including invalid VM scenarios. These practices reduce invalid VM incidents by 95%.

Yes, but use cautiously—automation works for simple cases (disconnected storage, host reconnect), risky for corrupted files. Safe automation: script to detect invalid VMs and attempt re-registration. PowerCLI: Get-VM | Where {$.ExtensionData.Runtime.ConnectionState -eq 'invalid'} | ForEach { Remove-VM -VM $ -Confirm:$false; New-VM -VMFilePath $.ExtensionData.Config.Files.VmPathName -Location $.VMHost }. This handles VMs where files exist but registration stale. Limitations: doesn't fix missing files, corrupted .vmx, storage issues. Better approach: detection + notification script—alert admins of invalid VMs for manual review. Example: daily scheduled task runs Get-VM invalid check, sends email with list for investigation. Risk: auto-registration without verification can register wrong .vmx file, cause config mismatches. Recommended: semi-automated—script detects and prepares commands, admin reviews/executes. Production safety: test automation in lab environment first.

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